Differential expression and clinical significance of DNA methylation in skin cancer

Tang Yaping, Huang Yixiao, Wang Lumei, Chen Yinghua

Chinese Journal of Clinical Anatomy ›› 2025, Vol. 43 ›› Issue (4) : 486-490.

PDF(1544 KB)
PDF(1544 KB)
Chinese Journal of Clinical Anatomy ›› 2025, Vol. 43 ›› Issue (4) : 486-490. DOI: 10.13418/j.issn.1001-165x.2025.4.21

Differential expression and clinical significance of DNA methylation in skin cancer

  • Tang Yaping, Huang Yixiao, Wang Lumei, Chen Yinghua*
Author information +
History +

Abstract

Recent epigenetic studies demonstrate that DNA methylationa key regulatory mechanism modulates tumor related gene expression and drives the development, progression, and metastasis of skin cancer. This review summarizes evidence on how methylation levels of key genes (CLDN11,  MGMT, PTCH1, ID4) drive progression in melanoma, basal cell carcinoma (BCC), and cutaneous squamous cell carcinoma (cSCC) the three predominant skin malignancies-and evaluates the clinical utility of methylation detection techniques for diagnosis and treatment. The article also discusses emerging therapeutic strategies targeting DNA methylation and elucidates critical methylated genes with their underlying mechanisms, providing a theoretical foundation for early detection, molecular subtyping, and targeted therapy of skin cancer.

Key words

DNA methylation /   /   / Skin cancer /   /   /   / Aberrant methylation /   /   /   / Diagnostic indicators

Cite this article

Download Citations
Tang Yaping, Huang Yixiao, Wang Lumei, Chen Yinghua. Differential expression and clinical significance of DNA methylation in skin cancer[J]. Chinese Journal of Clinical Anatomy. 2025, 43(4): 486-490 https://doi.org/10.13418/j.issn.1001-165x.2025.4.21

References

[1]  Nishiyama A, Nakanishi M. Navigating the DNA methylation landscape of cancer[J]. Trends Genet, 2021, 37(11): 1012-1027. DOI:10.1016/j.tig.2021.05.002.
[2] Patani H, Rushton MD, Higham J, et al. Transition to naïve human pluripotency mirrors pan-cancer DNA hypermethylation[J].Nat Commun,2020,11:3671. DOI:10.1038/s41467-020-17269-3.
[3]  He J, He H, Qi Y, et al . Application of epigenetics in dermatological research and skin management[J].J Cosmet Dermatol,2022,21(5):1920-1930. DOI:10.1111/jocd.14355.
[4]  Chen Z, Zhang Y . Role of Mammalian DNA Methyltransferases in Development[J]. Annu Rev Biochem, 2020, 89: 135-158. DOI:10.1146/annurev-biochem-103019-102815.
[5] Herman JG, Baylin SB . Gene silencing in cancer in association with promoter hypermethylation[J]. N Engl J Med, 2003, 349(21): 2042-2054. DOI:10.1056/NEJMra023075.
[6] Ressler JM, Tomasich E, Hatziioannou T, et al . DNA Methylation Signatures Correlate with Response to Immune Checkpoint Inhibitors in Metastatic Melanoma[J]. Target Oncol, 2024, 19(2): 263-275. DOI:10.1007/s11523-024-01041-4.
[7]  Gao L, van den Hurk K, Moerkerk PTM, et al . Promoter CpG island hypermethylation in dysplastic nevus and melanoma: CLDN11 as an epigenetic biomarker for malignancy[J]. J Invest Dermatol, 2014, 134(12): 2957-2966. DOI:10.1038/jid.2014.270.
[8] Busch C, Geisler J, Lillehaug JR, et al . MGMT expression levels predict disease stabilisation, progression-free and overall survival in patients with advanced melanomas treated with DTIC[J]. Eur J Cancer, 2010, 46(11): 2127-2133. DOI:10.1016/j.ejca.2010.04.023.
[9]  Mori T, O’Day SJ, Umetani N, et al . Predictive utility of circulating methylated DNA in serum of melanoma patients receiving biochemotherapy[J]. J Clin Oncol, 2005, 23(36): 9351-9358. DOI:10.1200/JCO.2005.02.9876.
[10]Spugnardi M, Tommasi S, Dammann R, et al. Epigenetic inactivation of RAS association domain family protein 1 (RASSF1A) in malignant cutaneous melanoma[J]. Cancer Res, 2003, 63(7): 1639-1643. PMID:12670917.
[11]Pabalan N, Kunjantarachot A, Ruangpratheep C, et al . Potential of RASSF1A promoter methylation as biomarker for endometrial cancer: A systematic review and meta-analysis[J]. Gynecol Oncol, 2017, 146(3): 603-608. DOI:10.1016/j.ygyno.2017.06.017.
[12]Meevassana J, Varophas S, Prabsattru P, et al . 5-Methylcytosine immunohistochemistry for predicting cutaneous melanoma prognosis[J]. Sci Rep, 2024, 14(1): 7554. DOI:10.1038/s41598-024-58011-z.
[13]Tellez CS, Shen L, Estécio MRH, et al . CpG island methylation profiling in human melanoma cell lines[J].Melanoma Res,2009,19(3):146-155. DOI:10.1097/cmr.0b013e32832b274e.
[14]Gillespie AM, Coleman RE . The potential of melanoma antigen expression in cancer therapy[J]. Cancer Treat Rev, 1999, 25(4): 219-227. DOI:10.1053/ctrv.1999.0126.
[15]Kuriyama Y, Shimizu A, Kanai S, et al . Expression of long interspersed nuclear elements-1 as a surrogate marker for global genomic hypomethylation of malignant skin tumors[J]. J Dermatol Sci, 2020, 99(3): 213-215. DOI:10.1016/j.jdermsci.2020.07.008.
[16]Tonella L, Pala V, Ponti R, et al . Prognostic and Predictive Biomarkers in Stage III Melanoma: Current Insights and Clinical Implications[J]. Int J Mol Sci, 2021, 22(9). DOI:10.3390/ijms22094561.
[17]Cheng PF, Shakhova O, Widmer DS, et al . Methylation-dependent SOX9 expression mediates invasion in human melanoma cells and is a negative prognostic factor in advanced melanoma[J]. Genome Biol, 2015, 16(1): 42. DOI:10.1186/s13059-015-0594-4.
[18]Seidl-Philipp M, Frischhut N, Höllweger N, et al . Known and new facts on basal cell carcinoma[J]. J Dtsch Dermatol Ges, 2021, 19(7): 1021-1041. DOI:10.1111/ddg.14580.
[19]Brinkhuizen T, van den Hurk K, Winnepenninckx VJL, et al . Epigenetic changes in Basal Cell Carcinoma affect SHH and WNT signaling components[J]. PloS One, 2012, 7(12): e51710. DOI:10.1371/journal.pone.0051710.
[20]Chiang A, Tan CZ, Kuonen F, et al . Genetic Mutations Underlying Phenotypic Plasticity in Basosquamous Carcinoma[J]. J Invest Dermatol, 2019,139(11):2263-2271.e5. DOI:10.1016/j.jid.2019.03. 1163.
[21]Athar M, Li C, Kim AL, et al . Sonic hedgehog signaling in Basal cell nevus syndrome[J]. Cancer Res, 2014, 74(18): 4967-4975. DOI:10.1158/0008-5472.CAN-14-1666.
[22]Epstein EH . Basal cell carcinomas: attack of the hedgehog[J]. Nat Rev Cancer, 2008, 8(10): 743-754. DOI:10.1038/nrc2503.
[23]Heitzer E, Bambach I, Dandachi N, et al . PTCH promoter methylation at low level in sporadic basal cell carcinoma analysed by three different approaches[J]. Exp Dermatol, 2010, 19(10): 926-928. DOI:10.1111/j.1600-0625.2010.01120.x.
[24]Wu W, Zhang J, Yang H, et al . Examination of AKAP12 promoter methylation in skin cancer using methylation-sensitive high-resolution melting analysis[J]. Clin Exp Dermatol, 2011, 36(4): 381-385. DOI:10.1111/j.1365-2230.2010.03968.x.
[25]Wu X, Wu T, Li K, et al. The Mechanism and Influence of AKAP12 in Different Cancers[J]. Biomed Environ Sci, 2018, 31(12): 927-932. DOI:10.3967/bes2018.127.
[26]Bucko PJ, Scott JD. Drugs That Regulate Local Cell Signaling: AKAP Targeting as a Therapeutic Option[J]. Annu Rev Pharmacol Toxicol, 2021, 61: 361-379. DOI:10.1146/annurev-pharmtox-022420-112134.
[27]Lodygin D, Yazdi AS, Sander CA . Analysis of 14-3-3sigma expression in hyperproliferative skin diseases reveals selective loss associated with CpG-methylation in basal cell carcinoma[J]. Oncogene, 2003, 22(35): 5519-5524. DOI:10.1038/sj.onc.1206854.
[28]Darr OA, Colacino JA, Tang AL, et al . Epigenetic alterations in metastatic cutaneous carcinoma[J]. Head  Neck, 2015, 37(7): 994-1001. DOI:10.1002/hed.23701.
[29]Li L, Li F, Xia Y, et al . UVB induces cutaneous squamous cell carcinoma progression by de novo ID4 methylation via methylation regulating enzymes[J]. EBioMedicine, 2020, 57: 102835. DOI:10.1016/j.ebiom. 2020.102835.
[30]Ko EK, Capell BC. Methyltransferases in the Pathogenesis of Keratinocyte Cancers[J]. Cancers, 2021, 13(14): 3402. DOI:10.3390/cancers13143402.
[31]Zhao H, Ming T, Tang S, et al . Wnt signaling in colorectal cancer: pathogenic role and therapeutic target[J]. Mol Cancer, 2022, 21(1): 144. DOI:10.1186/s12943-022-01616-7.
[32]Lang CMR, Chan CK, Veltri A, et al . Wnt Signaling Pathways in Keratinocyte Carcinomas[J]. Cancers, 2019, 11(9): 1216. DOI:10.3390/cancers11091216.
[33]Murao K, Kubo Y, Ohtani N , et al. Epigenetic abnormalities in cutaneous squamous cell carcinomas: frequent inactivation of the RB1/p16 and p53 pathways: Epigenetic abnormalities in cutaneous SCCs[J]. Br J Dermatol, 2006, 155(5): 999-1005. DOI:10.1111/j.1365-2133. 2006. 07487.x.
[34]Sharma P, Chinaranagari S, Patel D, et al . Epigenetic inactivation of inhibitor of differentiation 4 (Id4) correlates with prostate cancer[J]. Cancer Med, 2012, 1(2): 176-186. DOI:10.1002/cam4.16.
[35]Pan Y, Song Y, Cheng L, et al . Analysis of methylation-driven genes for predicting the prognosis of patients with head and neck squamous cell carcinoma[J]. J Cell Biochem, 2019, 120(12): 19482-19495. DOI:10.1002/jcb.29252.
[36]Venza M, Visalli M, Catalano T, et al . DSS1 promoter hypomethylation and overexpression predict poor prognosis in melanoma and squamous cell carcinoma patients[J]. Hum Pathol, 2017, 60: 137-146. DOI:10.1016/j.humpath.2016.10.018.
PDF(1544 KB)

Accesses

Citation

Detail

Sections
Recommended

/